Transcript: lnc-ABCA1-8:5

Basic information

LNCipedia transcript ID: lnc-ABCA1-8:5 
LNCipedia gene ID: lnc-ABCA1-8
Location (hg19): chr9:107987373-108007383
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1371 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000109338.1|ENCT00000459251.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -83.0472 non-coding 
CPAT coding probability 1.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ABCA1-8:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ABCA1-8:5
5.0 lnc-ABCA1-8:5
5.1 lnc-ERP44-54:4
5.2 lnc-ABCA1-8:5