Transcript: lnc-ABCA5-6:3

Basic information

LNCipedia transcript ID: lnc-ABCA5-6:3 
LNCipedia gene ID: lnc-ABCA5-6
Location (hg19): chr17:67471567-67481613
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2350 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000267653.1|HBMT00000636093.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -77.2531 non-coding 
CPAT coding probability 15.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ABCA5-6:3 yes no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ABCA5-6:3
5.0 lnc-ABCA5-6:3
5.1 lnc-GRB2-72:2
5.2 lnc-ABCA5-6:3