Transcript: lnc-ABCA5-7:3

Basic information

LNCipedia transcript ID: lnc-ABCA5-7:3 
LNCipedia gene ID: lnc-ABCA5-7
Location (hg19): chr17:67529589-67532158
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 397 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: l_1484_chr17:67529588-67532158_breast
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -357.6972 non-coding 
CPAT coding probability 0.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ABCA5-7:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ABCA5-7:3
4.0 lnc-ABCA5-7:3
4.1 lnc-ABCA5-7:3
5.0 lnc-ABCA5-7:3
5.1 lnc-GRB2-71:3
5.2 lnc-ABCA5-7:3