Transcript: lnc-ABCC4-1:1

Basic information

LNCipedia transcript ID: lnc-ABCC4-1:1 
LNCipedia gene ID: lnc-ABCC4-1
Location (hg19): chr13:95954705-95956401
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1016 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00021689; ENST00000429011.1; LINC00361-001; OTTHUMT00000045477.1; NONHSAT034754
Alternative gene names: XLOC_010696; linc-ABCC4-1; ENSG00000237796.1; LINC00361; OTTHUMG00000017215.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -25.0912 non-coding 
CPAT coding probability 2.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ABCC4-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ABCC4-1:1
3.1 lnc-ABCC4-1:1
4.0 lnc-ABCC4-1:1
4.1 lnc-ABCC4-1:1
5.0 lnc-ABCC4-1:1
5.1 lnc-IRS2-83:1
5.2 lnc-ABCC4-1:1