Transcript: lnc-ABCD3-2:3

Basic information

LNCipedia transcript ID: lnc-ABCD3-2:3 
LNCipedia gene ID: lnc-ABCD3-2
Location (hg19): chr1:94798823-94800404
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 480 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00000248; ENST00000418242; ENST00000418242.1; RP11-148B18.3-001; OTTHUMT00000029385.1; NONHSAT004587
Alternative gene names: XLOC_000301; linc-ABCD3-1; ENSG00000226835; RP11-148B18.3; ENSG00000226835.1; OTTHUMG00000010650.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -185.9105 non-coding 
CPAT coding probability 0.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ABCD3-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ABCD3-2:3
3.1 lnc-ABCD3-2:3
4.0 lnc-ABCD3-2:3
4.1 lnc-ABCD3-2:3
5.0 lnc-ABCD3-2:3
5.1 lnc-BTBD8-34:12
5.2 lnc-ABCD3-2:3