Transcript: lnc-ABCD3-4:1

Basic information

LNCipedia transcript ID: lnc-ABCD3-4:1 
LNCipedia gene ID: lnc-ABCD3-4
Ensembl Gene ID: ENSG00000233482
Ensembl Transcript ID: ENST00000439455
Location (hg19): chr1:94610667-94611175
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 352 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000247; ENST00000439455.1; RP11-78O9.1-001; OTTHUMT00000029326.1; NONHSAT004572
Alternative gene names: XLOC_000299; linc-ABCD3-3; ENSG00000233482.1; RP11-78O9.1; OTTHUMG00000010623.1; AC093579.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -249.6074 non-coding 
CPAT coding probability 1.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ABCD3-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ABCD3-4:1
3.1 lnc-ABCD3-4:1
4.0 lnc-ABCD3-4:1
4.1 lnc-ABCD3-4:1
5.0 lnc-ABCD3-4:1
5.1 lnc-BTBD8-31:1
5.2 lnc-ABCD3-4:1