Transcript: lnc-ABI1-3:3

Basic information

LNCipedia transcript ID: lnc-ABI1-3:3 
LNCipedia gene ID: lnc-ABI1-3
Location (hg19): chr10:26866605-26868236
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 422 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00017941; ENST00000449071; ENST00000449071.1; RP11-128B16.3-001; OTTHUMT00000047266.1; NONHSAT011833
Alternative gene names: XLOC_008752; linc-ENKUR-2; ENSG00000236894; RP11-128B16.3; ENSG00000236894.1; OTTHUMG00000017840.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -24.9075 non-coding 
CPAT coding probability 6.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ABI1-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ABI1-2:3
3.1 lnc-ABI1-3:3
4.0 lnc-ABI1-3:3
4.1 lnc-ABI1-3:3
5.0 lnc-ABI1-3:3
5.1 lnc-MPP7-35:3
5.2 lnc-ABI1-3:3