Transcript: lnc-ABI3-2:6

Basic information

LNCipedia transcript ID: lnc-ABI3-2:6 
LNCipedia gene ID: lnc-ABI3-2
Ensembl Gene ID: ENSG00000177369
Ensembl Transcript ID: ENST00000511008
Location (hg19): chr17:47325605-47336024
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 719 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000511008; ENST00000511008.1; RP1-62O9.3-003; OTTHUMT00000364530.1
Alternative gene names: ENSG00000177369; RP1-62O9.3; ENSG00000177369.4; OTTHUMG00000161323.1; ENSG00000177369.8; FLJ40194; AC004797.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.6417 non-coding 
CPAT coding probability 41.55% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ABI3-2:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ABI3-2:7
3.1 lnc-ABI3-2:6
4.0 lnc-ABI3-2:6
4.1 lnc-ABI3-2:6
5.0 lnc-ABI3-2:6
5.1 lnc-ACSF2-38:7
5.2 lnc-ABI3-2:6