Transcript: lnc-ABI3-6:1

Basic information

LNCipedia transcript ID: lnc-ABI3-6:1 
LNCipedia gene ID: lnc-ABI3-6
Location (hg19): chr17:47249257-47250608
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1352 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000575159.1; RP11-708H21.4-001; OTTHUMT00000438281.1; NONHSAT054511
Alternative gene names: ENSG00000262973.1; RP11-708H21.4; OTTHUMG00000177660.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.5361 non-coding 
CPAT coding probability 20.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ABI3-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-B4GALNT2-1:1
4.0 lnc-B4GALNT2-1:1
4.1 lnc-B4GALNT2-1:1
5.0 lnc-B4GALNT2-1:1
5.1 lnc-ACSF2-40:1
5.2 lnc-ABI3-6:1