Transcript: lnc-ABR-5:6

Basic information

LNCipedia transcript ID: lnc-ABR-5:6 
LNCipedia gene ID: lnc-ABR-5
Location (hg19): chr17:1164578-1171596
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1545 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000032745.1|MICT00000139365.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 7.8605 non-coding 
CPAT coding probability 0.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ABR-5:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ABR-5:6
5.0 lnc-ABR-5:6
5.1 lnc-RPH3AL-30:2
5.2 lnc-ABR-5:6