Transcript: lnc-ABT1-2:2

Basic information

LNCipedia transcript ID: lnc-ABT1-2:2 
LNCipedia gene ID: lnc-ABT1-2
Ensembl Gene ID: ENSG00000284607
Ensembl Transcript ID: ENST00000641660
RefSeq ID: NR_134611
Location (hg19): chr6:26569552-26574926
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2884 bp
Exons: 2
Sources: Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000641660.1; NR_134611.1
Alternative gene names: ENSG00000284607.1; AL121936.1; LOC105374988


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 12.2885 non-coding 
CPAT coding probability 0.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ABT1-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-CARMIL1-43:2
5.1 lnc-CARMIL1-43:2
5.2 lnc-ABT1-2:2