Transcript: lnc-ACO1-10:1

Basic information

LNCipedia transcript ID: lnc-ACO1-10:1 
LNCipedia gene ID: lnc-ACO1-10
Location (hg19): chr9:32553187-32553801
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 610 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT130675
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.1512 non-coding 
CPAT coding probability 0.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ACO1-10:1 no no no no

Available literature

  1. Sørensen (2015), Long non-coding RNA expression profiles predict metastasis in lymph node-negative breast cancer independently of traditional prognostic markers., Breast Cancer Res.
  2. Su (2014), Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TIGD1L2-4:1
4.0 lnc-TIGD1L2-4:1
4.1 TOPORS-AS1:19
5.0 TOPORS-AS1:19
5.1 lnc-RECK-77:19
5.2 lnc-ACO1-10:1