Transcript: lnc-ACOT11-1:1

Basic information

LNCipedia transcript ID: lnc-ACOT11-1:1 
LNCipedia gene ID: lnc-ACOT11-1
Location (hg19): chr1:54982177-54983024
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 468 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00000947; NONHSAT003379
Alternative gene names: XLOC_000202; linc-ACOT11-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -321.3862 non-coding 
CPAT coding probability 41.67% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ACOT11-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ACOT11-1:1
3.1 lnc-ACOT11-1:1
4.0 lnc-ACOT11-1:1
4.1 lnc-ACOT11-1:1
5.0 lnc-ACOT11-1:1
5.1 lnc-ACOT11-1:1
5.2 lnc-ACOT11-1:1