Transcript: lnc-ACOXL-1:1

Basic information

LNCipedia transcript ID: lnc-ACOXL-1:1 
LNCipedia gene ID: lnc-ACOXL-1
Ensembl Gene ID: ENSG00000231536
Ensembl Transcript ID: ENST00000458252
Location (hg19): chr2:111368493-111369981
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 747 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000458252.1; AC123886.2-001; OTTHUMT00000331942.1; NONHSAT073225
Alternative gene names: ENSG00000231536.1; AC123886.2; OTTHUMG00000153641.1; AC226101.2; AC226101.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.4403 non-coding 
CPAT coding probability 0.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ACOXL-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ACOXL-1:1
4.0 lnc-ACOXL-1:1
4.1 lnc-ACOXL-1:1
5.0 lnc-ACOXL-1:1
5.1 lnc-SULT1C4-30:1
5.2 lnc-ACOXL-1:1