Transcript: lnc-ACSL1-3:1

Basic information

LNCipedia transcript ID: lnc-ACSL1-3:1 
LNCipedia gene ID: lnc-ACSL1-3
Location (hg19): chr4:185905431-185909281
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3851 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000581151.1; RP11-517M22.1-001; OTTHUMT00000361121.1; NONHSAT099589
Alternative gene names: ENSG00000265405.1; RP11-517M22.1; OTTHUMG00000160553.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -102.069 non-coding 
CPAT coding probability 80.44% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ACSL1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ACSL1-3:1
4.0 lnc-ACSL1-3:1
4.1 lnc-ACSL1-3:1
5.0 lnc-ACSL1-3:1
5.1 lnc-MTNR1A-22:1
5.2 lnc-ACSL1-3:1