Transcript: lnc-ACTL7A-1:1

Basic information

LNCipedia transcript ID: lnc-ACTL7A-1:1 
LNCipedia gene ID: lnc-ACTL7A-1
Location (hg19): chr9:111463650-111465372
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 397 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00015734; ENST00000415465; ENST00000415465.1; RP11-339N8.1-001; OTTHUMT00000053568.1; NONHSAT133918
Alternative gene names: XLOC_007515; linc-ACTL7A-1; ENSG00000231678; RP11-339N8.1; ENSG00000231678.1; OTTHUMG00000020459.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -360.6385 non-coding 
CPAT coding probability 9.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ACTL7A-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ACTL7A-1:1
3.1 lnc-ACTL7A-1:1
4.0 lnc-ACTL7A-1:1
4.1 lnc-ACTL7A-1:1
5.0 lnc-ACTL7A-1:1
5.1 lnc-PRPF4-96:1
5.2 lnc-ACTL7A-1:1