Transcript: lnc-ACVR1-1:1

Basic information

LNCipedia transcript ID: lnc-ACVR1-1:1 
LNCipedia gene ID: lnc-ACVR1-1
Ensembl Gene ID: ENSG00000234584
Ensembl Transcript ID: ENST00000447019
Location (hg19): chr2:158582220-158592517
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 545 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000447019; ENST00000447019.1; AC019186.1-001; OTTHUMT00000333003.1; NONHSAT075071
Alternative gene names: ENSG00000234584; AC019186.1; ENSG00000234584.1; OTTHUMG00000153914.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -110.0882 non-coding 
CPAT coding probability 0.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ACVR1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ACVR1-1:1
3.1 lnc-ACVR1-1:1
4.0 lnc-ACVR1-1:1
4.1 lnc-ACVR1-1:1
5.0 lnc-ACVR1-1:1
5.1 lnc-MMADHC-130:1
5.2 lnc-ACVR1-1:1