Transcript: lnc-ACVR2A-1:1

Basic information

LNCipedia transcript ID: lnc-ACVR2A-1:1 
LNCipedia gene ID: lnc-ACVR2A-1
Location (hg19): chr2:147637477-147659500
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 532 bp
Exons: 7
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00003028; ENST00000436245; ENST00000436245.1; AC062032.1-001; OTTHUMT00000332203.1; NONHSAT074851
Alternative gene names: XLOC_001700; linc-ACVR2A-1; ENSG00000227902; AC062032.1; ENSG00000227902.1; OTTHUMG00000153712.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.7632 non-coding 
CPAT coding probability 1.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ACVR2A-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ACVR2A-1:1
3.1 lnc-ACVR2A-1:1
4.0 lnc-ACVR2A-1:1
4.1 lnc-ACVR2A-1:1
5.0 lnc-ACVR2A-1:1
5.1 lnc-KCNJ3-58:1
5.2 lnc-ACVR2A-1:1