Transcript: lnc-ADAM18-1:2

Basic information

LNCipedia transcript ID: lnc-ADAM18-1:2 
LNCipedia gene ID: lnc-ADAM18-1
Location (hg19): chr8:39433113-39437653
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 273 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000523523; ENST00000523523.1; CTD-2024D23.1-002; OTTHUMT00000376914.1; NONHSAT126177
Alternative gene names: ENSG00000254082; CTD-2024D23.1; ENSG00000254082.1; OTTHUMG00000164039.1; ENSG00000254082.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -193.1573 non-coding 
CPAT coding probability 0.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ADAM18-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ADAM18-1:2
3.1 lnc-ADAM18-1:2
4.0 lnc-ADAM18-1:2
4.1 lnc-ADAM18-1:2
5.0 lnc-ADAM18-1:2
5.1 lnc-KCNU1-58:4
5.2 lnc-ADAM18-1:2