Transcript: lnc-ADAMTS12-1:1

Basic information

LNCipedia transcript ID: lnc-ADAMTS12-1:1 
LNCipedia gene ID: lnc-ADAMTS12-1
Ensembl Gene ID: ENSG00000250583
Ensembl Transcript ID: ENST00000511579
Location (hg19): chr5:33519721-33522335
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 917 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009634; ENST00000511579; ENST00000511579.1; CTD-2233C11.2-001; OTTHUMT00000367617.1; NONHSAT100958
Alternative gene names: XLOC_004774; linc-ZFR-5; ENSG00000250583; CTD-2233C11.2; ENSG00000250583.1; OTTHUMG00000162158.1; AC034232.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.0948 non-coding 
CPAT coding probability 3.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ADAMTS12-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ADAMTS12-1:1
3.1 lnc-ADAMTS12-1:1
4.0 lnc-ADAMTS12-1:1
4.1 lnc-ADAMTS12-1:1
5.0 lnc-ADAMTS12-1:1
5.1 lnc-SELENOP-104:1
5.2 lnc-ADAMTS12-1:1