Transcript: lnc-ADAMTS12-4:1

Basic information

LNCipedia transcript ID: lnc-ADAMTS12-4:1 
LNCipedia gene ID: lnc-ADAMTS12-4
Ensembl Gene ID: ENSG00000251281
Ensembl Transcript ID: ENST00000511840
Location (hg19): chr5:33011428-33017713
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 425 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009631; ENST00000511840; ENST00000511840.1; CTD-2066L21.2-001; OTTHUMT00000366716.1; NONHSAT100942
Alternative gene names: XLOC_004772; linc-ZFR-3; ENSG00000251281; CTD-2066L21.2; ENSG00000251281.1; OTTHUMG00000162005.1; AC034223.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -127.2666 non-coding 
CPAT coding probability 1.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ADAMTS12-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ADAMTS12-3:1
3.1 lnc-ADAMTS12-4:1
4.0 lnc-ADAMTS12-4:1
4.1 lnc-ADAMTS12-4:1
5.0 lnc-ADAMTS12-4:1
5.1 lnc-SELENOP-108:1
5.2 lnc-ADAMTS12-4:1