Transcript: lnc-ADAMTS12-6:6

Basic information

LNCipedia transcript ID: lnc-ADAMTS12-6:6 
LNCipedia gene ID: lnc-ADAMTS12-6
Ensembl Gene ID: ENSG00000249572
Ensembl Transcript ID: ENST00000507251
Location (hg19): chr5:33424131-33440725
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 537 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009633; ENST00000507251.1; CTD-2203K17.1-001; OTTHUMT00000366714.1; NONHSAT100950
Alternative gene names: XLOC_004773; linc-ZFR-4; ENSG00000249572.1; CTD-2203K17.1; OTTHUMG00000162003.1; AC034231.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.8967 non-coding 
CPAT coding probability 0.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ADAMTS12-6:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ADAMTS12-2:1
3.1 lnc-ADAMTS12-2:1
4.0 lnc-ADAMTS12-2:1
4.1 lnc-ADAMTS12-2:1
5.0 lnc-ADAMTS12-2:1
5.1 lnc-SELENOP-106:6
5.2 lnc-ADAMTS12-6:6