Transcript: lnc-ADAMTS18-3:1

Basic information

LNCipedia transcript ID: lnc-ADAMTS18-3:1 
LNCipedia gene ID: lnc-ADAMTS18-3
Ensembl Gene ID: ENSG00000261707
Ensembl Transcript ID: ENST00000563690
Location (hg19): chr16:77775365-77776897
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 800 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000563690.1; RP11-264M12.2-001; OTTHUMT00000434009.1; NONHSAT143808
Alternative gene names: ENSG00000261707.1; RP11-264M12.2; OTTHUMG00000176844.1; AC092134.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.5176 non-coding 
CPAT coding probability 0.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ADAMTS18-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ADAMTS18-3:1
4.0 lnc-ADAMTS18-3:1
4.1 lnc-ADAMTS18-3:1
5.0 lnc-ADAMTS18-3:1
5.1 lnc-MAF-24:3
5.2 lnc-ADAMTS18-3:1