Transcript: lnc-ADAMTS20-1:1

Basic information

LNCipedia transcript ID: lnc-ADAMTS20-1:1 
LNCipedia gene ID: lnc-ADAMTS20-1
Ensembl Gene ID: ENSG00000257373
Ensembl Transcript ID: ENST00000551279
Location (hg19): chr12:43373057-43390289
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 552 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000551279; ENST00000551279.1; RP11-547C5.2-001; OTTHUMT00000403640.1; NONHSAT027794
Alternative gene names: ENSG00000257373; RP11-547C5.2; ENSG00000257373.1; OTTHUMG00000169350.1; AC012038.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -718.9166 non-coding 
CPAT coding probability 2.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ADAMTS20-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ADAMTS20-1:1
3.1 lnc-ADAMTS20-1:1
4.0 lnc-ADAMTS20-1:1
4.1 lnc-ADAMTS20-1:1
5.0 lnc-ADAMTS20-1:1
5.1 lnc-RPAP3-45:1
5.2 lnc-ADAMTS20-1:1