Transcript: lnc-ADIRF-1:4

Basic information

LNCipedia transcript ID: lnc-ADIRF-1:4 
LNCipedia gene ID: lnc-ADIRF-1
Ensembl Gene ID: ENSG00000151303
Ensembl Transcript ID: ENST00000444431
Location (hg19): chr10:88752163-88769960
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4560 bp
Exons: 7
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000444431.1; AGAP11-002; OTTHUMT00000049193.1
Alternative gene names: ENSG00000151303.10; AGAP11; OTTHUMG00000018667.2; ENSG00000151303.11; RP11-96C23.13; AL136982.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 383.5566 coding 
CPAT coding probability 100.00% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ADIRF-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C10orf116-1:3
4.0 lnc-FAM25A-1:6
4.1 lnc-FAM25A-1:6
5.0 lnc-FAM25A-1:6
5.1 lnc-SMC3-324:5
5.2 lnc-ADIRF-1:4