Transcript: lnc-AFDN-11:2

Basic information

LNCipedia transcript ID: lnc-AFDN-11:2 
LNCipedia gene ID: lnc-AFDN-11
Ensembl Gene ID: ENSG00000285212
Ensembl Transcript ID: ENST00000645341
Location (hg19): chr6:168197327-168225825
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 821 bp
Exons: 4
Sources: Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000645341.1
Alternative gene names: ENSG00000285212.1; AL009178.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -32.5402 non-coding 
CPAT coding probability 0.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AFDN-11:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-SYTL3-92:2
5.1 lnc-SYTL3-92:2
5.2 lnc-AFDN-11:2