Transcript: lnc-AFG1L-2:3

Basic information

LNCipedia transcript ID: lnc-AFG1L-2:3 
LNCipedia gene ID: lnc-AFG1L-2
Location (hg19): chr6:108582545-108590232
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1242 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000085276.1|ENCT00000376014.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -22.0151 non-coding 
CPAT coding probability 1.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AFG1L-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-LACE1-2:3
5.0 lnc-LACE1-2:3
5.1 lnc-SMPD2-30:3
5.2 lnc-AFG1L-2:3