Transcript: lnc-AGAP4-2:1

Basic information

LNCipedia transcript ID: lnc-AGAP4-2:1 
LNCipedia gene ID: lnc-AGAP4-2
Location (hg19): chr10:46358510-46411606
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 656 bp
Exons: 7
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000435772.2; RP11-175I17.4-201
Alternative gene names: ENSG00000239883.2; RP11-175I17.4; OTTHUMG00000018091.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 571.5953 coding 
CPAT coding probability 46.55% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-AGAP4-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AGAP4-2:1
4.0 lnc-AGAP4-2:1
4.1 lnc-AGAP4-2:1
5.0 lnc-AGAP4-2:1
5.1 lnc-LRRC18-56:1
5.2 lnc-AGAP4-2:1