Transcript: lnc-AGAP4-2:3

Basic information

LNCipedia transcript ID: lnc-AGAP4-2:3 
LNCipedia gene ID: lnc-AGAP4-2
Location (hg19): chr10:46349533-46387931
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 798 bp
Exons: 5
Sources: NONCODE v4
Alternative transcript names: NONHSAT013118
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 155.4021 coding 
CPAT coding probability 17.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-AGAP4-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AGAP4-2:3
4.0 lnc-AGAP4-2:3
4.1 lnc-AGAP4-2:3
5.0 lnc-AGAP4-2:3
5.1 lnc-LRRC18-56:3
5.2 lnc-AGAP4-2:3