Transcript: lnc-AGAP5-1:11

Basic information

LNCipedia transcript ID: lnc-AGAP5-1:11 
LNCipedia gene ID: lnc-AGAP5-1
Location (hg19): chr10:75478918-75490192
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1190 bp
Exons: 8
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA206:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 96.7009 coding 
CPAT coding probability 90.87% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-AGAP5-1:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AGAP5-1:11
4.1 lnc-AGAP5-1:11
5.0 lnc-AGAP5-1:11
5.1 lnc-VSIR-31:25
5.2 lnc-AGAP5-1:11