Transcript: lnc-AGAP5-1:27

Basic information

LNCipedia transcript ID: lnc-AGAP5-1:27 
LNCipedia gene ID: lnc-AGAP5-1
Location (hg19): chr10:75478936-75490252
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1111 bp
Exons: 8
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000242288.6|ENST00000449532.2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 96.7009 coding 
CPAT coding probability 82.83% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-AGAP5-1:27 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AGAP5-1:27
5.0 lnc-AGAP5-1:27
5.1 lnc-VSIR-31:20
5.2 lnc-AGAP5-1:27