Transcript: lnc-AGAP5-1:29

Basic information

LNCipedia transcript ID: lnc-AGAP5-1:29 
LNCipedia gene ID: lnc-AGAP5-1
Location (hg19): chr10:75434053-75490252
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3838 bp
Exons: 19
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000242288.6|ENST00000399449.3
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 670.1865 coding 
CPAT coding probability 100.00% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-AGAP5-1:29 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AGAP5-1:29
5.0 lnc-AGAP5-1:29
5.1 lnc-VSIR-31:16
5.2 lnc-AGAP5-1:29