Transcript: lnc-AGAP9-39:1

Basic information

LNCipedia transcript ID: lnc-AGAP9-39:1 
LNCipedia gene ID: lnc-AGAP9-39
Ensembl Gene ID: ENSG00000254929
Ensembl Transcript ID: ENST00000431840
Location (hg19): :-
Strand:
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1241 bp
Exons: 0
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000431840.2
Alternative gene names: ENSG00000254929.6; RP11-144G6.12; AL591684.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 153.7371 coding 
CPAT coding probability 45.69% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-AGAP9-39:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-LRRC18-39:1
5.1 lnc-LRRC18-39:1
5.2 lnc-AGAP9-39:1