Transcript: lnc-AGO2-1:2

Basic information

LNCipedia transcript ID: lnc-AGO2-1:2 
LNCipedia gene ID: lnc-AGO2-1
Location (hg19): chr8:141532118-141535841
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3724 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT129371
Alternative gene names: LINC00980


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -86.6644 non-coding 
CPAT coding probability 7.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AGO2-1:2 yes no no no

Available literature

  1. Lennox (2016), Cellular localization of long non-coding RNAs affects silencing by RNAi more than by antisense oligonucleotides., Nucleic Acids Res.
  2. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE
  3. van Heesch (2014), Extensive localization of long noncoding RNAs to the cytosol and mono- and polyribosomal complexes., Genome Biol.
  4. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EIF2C2-1:2
4.0 CASC7:2
4.1 CASC7:2
5.0 CASC7:2
5.1 lnc-SLURP2-36:2
5.2 lnc-AGO2-1:2