Transcript: lnc-AGO2-2:5

Basic information

LNCipedia transcript ID: lnc-AGO2-2:5 
LNCipedia gene ID: lnc-AGO2-2
Ensembl Gene ID: ENSG00000259891
Ensembl Transcript ID: ENST00000564464
Location (hg19): chr8:141515912-141518142
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2231 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000564464.1; CTA-204B4.2-001; OTTHUMT00000377830.2; NONHSAT147666
Alternative gene names: ENSG00000259891.1; CTA-204B4.2; OTTHUMG00000164214.2; AC107375.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.3263 non-coding 
CPAT coding probability 0.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AGO2-2:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EIF2C2-2:1
4.0 lnc-EIF2C2-2:1
4.1 lnc-TRAPPC9-2:6
5.0 lnc-TRAPPC9-2:6
5.1 lnc-SLURP2-37:5
5.2 lnc-AGO2-2:5