Transcript: lnc-AGPAT2-1:13

Basic information

LNCipedia transcript ID: lnc-AGPAT2-1:13 
LNCipedia gene ID: lnc-AGPAT2-1
Location (hg19): chr9:139536537-139541020
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4484 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000228401.3|ENCT00000462226.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 17.1999 non-coding 
CPAT coding probability 22.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AGPAT2-1:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AGPAT2-1:13
5.0 lnc-AGPAT2-1:13
5.1 lnc-SEC16A-4:13
5.2 lnc-AGPAT2-1:13