Transcript: lnc-AGPAT2-2:6

Basic information

LNCipedia transcript ID: lnc-AGPAT2-2:6 
LNCipedia gene ID: lnc-AGPAT2-2
Ensembl Gene ID: ENSG00000279141
Ensembl Transcript ID: ENST00000623792
Location (hg19): chr9:139510764-139511298
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 534 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000623792.1
Alternative gene names: ENSG00000279141.3; LINC01451


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 23.3085 non-coding 
CPAT coding probability 69.28% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-AGPAT2-2:6 no no no no

Available literature

  1. Hang (2015), Notch 1 promotes cisplatin-resistant gastric cancer formation by upregulating lncRNA AK022798 expression., Anticancer Drugs


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AGPAT2-2:6
4.1 lnc-AGPAT2-2:6
5.0 lnc-AGPAT2-2:6
5.1 lnc-SEC16A-3:4
5.2 lnc-AGPAT2-2:6