Transcript: lnc-AGPAT4-1:3

Basic information

LNCipedia transcript ID: lnc-AGPAT4-1:3 
LNCipedia gene ID: lnc-AGPAT4-1
Location (hg19): chr6:161411350-161413450
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2101 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000272841.1|ENST00000608721.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -36.5906 non-coding 
CPAT coding probability 79.25% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-AGPAT4-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AGPAT4-1:3
5.0 lnc-AGPAT4-1:3
5.1 lnc-AGPAT4-1:3
5.2 lnc-AGPAT4-1:3