Transcript: lnc-AGPAT5-1:13

Basic information

LNCipedia transcript ID: lnc-AGPAT5-1:13 
LNCipedia gene ID: lnc-AGPAT5-1
RefSeq ID: NR_045217
Location (hg19): chr8:6693076-6699976
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1107 bp
Exons: 3
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_045217.1
Alternative gene names: GS1-24F4.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -44.9615 non-coding 
CPAT coding probability 5.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AGPAT5-1:13 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-DEFB106A-19:5
5.1 lnc-DEFB106A-19:5
5.2 lnc-AGPAT5-1:13