Transcript: lnc-AGPAT5-1:4

Basic information

LNCipedia transcript ID: lnc-AGPAT5-1:4 
LNCipedia gene ID: lnc-AGPAT5-1
Location (hg19): chr8:6693045-6699950
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1112 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT124793
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -44.9615 non-coding 
CPAT coding probability 9.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AGPAT5-1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AGPAT5-1:4
4.0 lnc-AGPAT5-1:4
4.1 lnc-AGPAT5-1:4
5.0 lnc-AGPAT5-1:4
5.1 lnc-DEFB106A-19:2
5.2 lnc-AGPAT5-1:4