Transcript: lnc-AGPAT5-1:7

Basic information

LNCipedia transcript ID: lnc-AGPAT5-1:7 
LNCipedia gene ID: lnc-AGPAT5-1
Location (hg19): chr8:6693080-6699979
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1106 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000245857.2|ENST00000500823.2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -44.9615 non-coding 
CPAT coding probability 5.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AGPAT5-1:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AGPAT5-1:7
5.0 lnc-AGPAT5-1:7
5.1 lnc-DEFB106A-19:6
5.2 lnc-AGPAT5-1:7