Transcript: lnc-AGPAT5-1:8

Basic information

LNCipedia transcript ID: lnc-AGPAT5-1:8 
LNCipedia gene ID: lnc-AGPAT5-1
Location (hg19): chr8:6693080-6727877
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 862 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000245857.2|HBMT00001384550.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 7.2337 non-coding 
CPAT coding probability 0.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AGPAT5-1:8 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AGPAT5-1:8
5.0 lnc-AGPAT5-1:8
5.1 lnc-DEFB106A-19:7
5.2 lnc-AGPAT5-1:8