Transcript: lnc-AGR3-1:2

Basic information

LNCipedia transcript ID: lnc-AGR3-1:2 
LNCipedia gene ID: lnc-AGR3-1
Ensembl Gene ID: ENSG00000237773
Ensembl Transcript ID: ENST00000415246
Location (hg19): chr7:17325903-17338083
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 596 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000415246.1; AC003075.4-005; OTTHUMT00000326307.1; NONHSAT119325
Alternative gene names: ENSG00000237773.1; AC003075.4; OTTHUMG00000152468.1; ENSG00000237773.5; AC003075.1; ENSG00000237773.6; AC073332.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -186.4456 non-coding 
CPAT coding probability 1.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AGR3-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AGR3-1:2
4.0 lnc-AGR3-1:2
4.1 lnc-AGR3-1:2
5.0 lnc-AGR3-1:2
5.1 lnc-AGR3-1:2
5.2 lnc-AGR3-1:2