Transcript: lnc-AGRN-2:10

Basic information

LNCipedia transcript ID: lnc-AGRN-2:10 
LNCipedia gene ID: lnc-AGRN-2
Location (hg19): chr1:995663-1001828
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 730 bp
Exons: 2
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA5:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -6.8214 non-coding 
CPAT coding probability 0.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AGRN-2:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AGRN-2:10
4.1 lnc-AGRN-2:10
5.0 lnc-AGRN-2:10
5.1 lnc-VAMP3-113:6
5.2 lnc-AGRN-2:10