Transcript: lnc-AGT-6:5

Basic information

LNCipedia transcript ID: lnc-AGT-6:5 
LNCipedia gene ID: lnc-AGT-6
Ensembl Gene ID: ENSG00000244137
Ensembl Transcript ID: ENST00000412344
Location (hg19): chr1:230846444-230931238
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 536 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000412344.1; RP11-99J16__A.2-003; OTTHUMT00000092178.1; NONHSAT010131
Alternative gene names: ENSG00000244137.1; RP11-99J16__A.2; OTTHUMG00000037778.1; AL512328.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -185.3768 non-coding 
CPAT coding probability 34.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AGT-6:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1orf198-3:1
4.0 lnc-AGT-6:5
4.1 lnc-AGT-6:5
5.0 lnc-AGT-6:5
5.1 lnc-EXOC8-13:8
5.2 lnc-AGT-6:5