Transcript: lnc-AHI1-3:1

Basic information

LNCipedia transcript ID: lnc-AHI1-3:1 
LNCipedia gene ID: lnc-AHI1-3
Ensembl Gene ID: ENSG00000236378
Ensembl Transcript ID: ENST00000447848
Location (hg19): chr6:136128286-136129604
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 777 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011567; ENST00000447848; ENST00000447848.1; RP11-394G3.2-001; OTTHUMT00000042366.1; NONHSAT115102
Alternative gene names: XLOC_005844; linc-AHI1; ENSG00000236378; RP11-394G3.2; ENSG00000236378.1; OTTHUMG00000015637.1; AL133319.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -152.7177 non-coding 
CPAT coding probability 1.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AHI1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AHI1-2:1
3.1 lnc-AHI1-3:1
4.0 lnc-AHI1-3:1
4.1 lnc-AHI1-3:1
5.0 lnc-AHI1-3:1
5.1 lnc-OLIG3-40:1
5.2 lnc-AHI1-3:1