Transcript: lnc-AIG1-8:17

Basic information

LNCipedia transcript ID: lnc-AIG1-8:17 
LNCipedia gene ID: lnc-AIG1-8
Ensembl Gene ID: ENSG00000232618
Ensembl Transcript ID: ENST00000417650
Location (hg19): chr6:143271348-143277783
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 554 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000417650; ENST00000417650.1; RP11-439L18.1-001; OTTHUMT00000042500.1; NONHSAT115323
Alternative gene names: ENSG00000232618; RP11-439L18.1; ENSG00000232618.1; OTTHUMG00000015716.1; AL355304.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -171.9046 non-coding 
CPAT coding probability 1.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AIG1-8:17 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AIG1-2:1
3.1 lnc-AIG1-2:1
4.0 lnc-AIG1-2:1
4.1 lnc-AIG1-8:17
5.0 lnc-AIG1-8:17
5.1 lnc-ADGRG6-8:16
5.2 lnc-AIG1-8:17