Transcript: lnc-AK6-1:2

Basic information

LNCipedia transcript ID: lnc-AK6-1:2 
LNCipedia gene ID: lnc-AK6-1
Ensembl Gene ID: ENSG00000249295
Ensembl Transcript ID: ENST00000508118
Location (hg19): chr5:68773307-68781439
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 326 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000508118.1; RP11-241G9.3-002; OTTHUMT00000369581.1; NONHSAT101924
Alternative gene names: ENSG00000249295.1; RP11-241G9.3; OTTHUMG00000162564.1; AC145146.2; AC145146.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -215.1934 non-coding 
CPAT coding probability 16.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AK6-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TAF9-1:2
4.0 lnc-TAF9-1:2
4.1 lnc-TAF9-1:2
5.0 lnc-TAF9-1:2
5.1 lnc-TRIM23-60:2
5.2 lnc-AK6-1:2