Transcript: lnc-AKAP1-1:1

Basic information

LNCipedia transcript ID: lnc-AKAP1-1:1 
LNCipedia gene ID: lnc-AKAP1-1
Ensembl Gene ID: ENSG00000263120
Ensembl Transcript ID: ENST00000572877
Location (hg19): chr17:55060110-55062465
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2356 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000572877.1; RP5-1107A17.4-001; OTTHUMT00000440637.1; NONHSAT054870
Alternative gene names: ENSG00000263120.1; RP5-1107A17.4; OTTHUMG00000178130.1; AC004584.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.1647 non-coding 
CPAT coding probability 5.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AKAP1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AKAP1-1:1
4.0 lnc-AKAP1-1:1
4.1 lnc-AKAP1-1:1
5.0 lnc-AKAP1-1:1
5.1 lnc-PRR11-31:1
5.2 lnc-AKAP1-1:1