Transcript: lnc-AKAP3-2:1

Basic information

LNCipedia transcript ID: lnc-AKAP3-2:1 
LNCipedia gene ID: lnc-AKAP3-2
Ensembl Gene ID: ENSG00000256988
Ensembl Transcript ID: ENST00000542988
Location (hg19): chr12:4915708-4917807
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 449 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000542988; ENST00000542988.1; RP11-234B24.4-001; OTTHUMT00000398919.1; NONHSAT025977
Alternative gene names: ENSG00000256988; RP11-234B24.4; ENSG00000256988.1; OTTHUMG00000168228.1; AC005833.4; AC005833.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -231.5097 non-coding 
CPAT coding probability 2.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AKAP3-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AKAP3-2:1
3.1 lnc-AKAP3-2:1
4.0 lnc-AKAP3-2:1
4.1 lnc-AKAP3-2:1
5.0 lnc-AKAP3-2:1
5.1 lnc-CHD4-63:1
5.2 lnc-AKAP3-2:1